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Chapter 5 ....continued
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5.8 |
Vegetation data inputs |
The evapotranspiration, plant growth and sediment transport modules require data for each vegetation type represented in the catchment. Most of this information is stored in the .veg> file, though a few parameter values are stored in the .par> file (see section 5.13) and some ancillary files.Two different types of .veg> file are used, depending on which modules are invoked in Topog_dynamic>. A type 1 .veg > file is used when the plant growth option is not invoked. This file type is also used when the sediment transport option is invoked. A type 2 .veg > file is used only when the plant growth option is invoked.
If the model is run on a sub-daily timestep, without sediment transport, then a .veg> file is not needed, as evapotranspiration is not computed.
5.8.1 Contents of the .veg file when the plant growth option is not invoked
When the plant growth option is not invoked, the vegetation data input requirements are quite simple. For such a case, an example type 1 .veg > file with two vegetation types (eucalypt trees and perennial grass) might look like this:
# Acan Asoil Rint Lex ccmax m lwpmax rmax ra rs rootfn rootwt fmgu canopa canoph 0.10 0.15 0.0005 -0.42 0.003 0.04 -150 10.0 20.0 100.0 0 1 0.1 0.9 7.5 0.10 0.15 0.0003 -0.65 0.0025 0.03 -200 1.5 50.0 70.0 1 1 0.4 0.7 0.2 where the parameters (from left to right) are:
Variable Units Typical values Description Acan (0-1) 0.1 - 0.3 albedo of the canopy; ignore if running model on a sub-daily timestep Asoil (0-1) 0.1 - 0.35 albedo of the soil; ignore if running model on a sub-daily timestep Rint m/lai/d 0.0003 - 0.0007 canopy interception coefficient; ignore if running model on a sub-daily timestep Lex (0-1) 0.3 - 0.6 canopy light extinction coefficient; ignore if running model on a sub-daily timestep iccmax m/s 0.001 - 0.006 maximum canopy conductance; ignore if running model on a sub-daily timestep m . 0.002 - 0.2 slope of the line relating vapour pressure deficit to canopy conductance; ignore if running model on a sub-daily timestep lwpmax m -80 - -200 maximum plant available soil water potential; ignore if running model on a sub-daily timestep rmax m 0.2 - 40.0 maximum plant rooting depth; ignore if running model on a sub-daily timestep ra s/m 15 - 60 aerodynamic resistance for the plant canopy; ignore if running model on a sub-daily timestep rs s/m 50 - 110 aerodynamic resistance for the soil surface; ignore if running model on a sub-daily timestep rootfn integer 0, 1 or 2 rooting density function flag (see below) ; ignore if running model on a sub-daily timestep xrootwt (0-1) 0-1 ignore this item; set to 1 for now C1
or
fmgu(0-1) 0-1 fraction of exposed soil, where 1 denotes soil is completely exposed and 0 denotes soil is completely covered; only needed when sediment transport option is invoked; see eq. 5.23 c
or
canopa(0-1) 0-1 fraction of canopy cover, where 1 denotes full canopy cover and 0 denotes no canopy cover; only needed when sediment transport option is invoked; see eq. 5.24 H
or
canophm 0 - 30 distance from ground to gravity centre of plant canopy; only needed when sediment transport option is invoked; see eq. 5.26 For each vegetation type, the user may select from three rooting density functions. These are:
Flag Description of rooting density function 0 Ritchie exponential decay with depth. This decay function is bounded by the minimum of either the specified maximum rooting depth (rmax) or the depth of the soil profile. 1 Proportionate extraction from each soil profile compartment based on compartment thickness. 2 Power-law extraction of the form x * (thickness)m where the constant x and exponent m are specified at the end of the vegetation file. If only one line of data is provided in the .veg> file, then Topog_dynamic > assumes that a single vegetation type is used for the catchment, and that there is only one vegetation layer. If more than one line of data is included in the .veg> file then this implies that multiple vegetation types or layers are being specified.
If multiple vegetation types are nominated, an overlay file defining the distribution of these types within the catchment must also be specified (see section 5.12.1). An overlay file is not needed if there is one type of overstorey and one type of understorey distributed uniformly across the catchment (in this case, two lines of data would be needed in the .veg> file).
5.8.2 Additional vegetation inputs when the plant growth option is not invoked
For each vegetation type represented in the catchment, a leaf area index (LAI) value must be given. This can be a single value for each vegetation layer, or a spatial map of values for the catchment (see section 5.12.3), generated using Topog_overlay>. In both cases, the LAI value or filename of LAI values must be specified in the .par> file, built using Topog_simgen> (see section 5.13).
5.8.3 Contents of the .veg file when the plant growth option is invoked
When the plant growth option is invoked, the vegetation data input requirements are more complicated. For such a case, an example type 2 .veg> file with four vegetation types (each line is a different type) might look like this.
#Acan Asoil Rint Lex Amax g1 lwpmax WH WN Thalf Topt jdgerm ddh Qpsat rmax sla xleafres xstemres xrootres xlmort xsmort xrmort abpart saltf ra rs xrootwt type 0.10 0.15 0.002 -0.42 0.012 0.3 -150 0.2 0.2 10 25 -1 -1 1200. 6.0 12.0 0.0004 0.0003 0.0004 0.001 0.0001 0.001 0.2 1.0 20.0 110.0 1. #eucalypt trees 0.10 0.15 0.0007 -0.65 0.010 0.7 -200 0.2 0.5 10 20 -1 -1 1000. 2.0 24.0 0.002 -1 0.0002 0.001 -1 0.001 0.1 1.0 50.0 60.0 1. # perennial pasture 0.10 0.15 0.0003 -0.65 0.025 0.7 -150 0.2 0.5 5 25 153 15000 1000. 1.5 24.0 0.004 -1 0.0012 0.004 -1 0.004 0.4 1.0 30.0 90.0 1. #wheat 0.10 0.15 0.0007 -0.65 0.024 0.7 -150 0.2 0.5 10 25 -1 -1 1200. 3.0 24.0 0.002 -1 0.002 0.001 -1 0.001 0.3 1.0 30.0 90.0 1. #lucerne
where the parameters (from left to right) are:
Variable Units Typical values Description Acan (0-1) 0.1 - 0.3 albedo of the canopy Asoil (0-1) 0.1 - 0.3 albedo of the soil Rint m/lai/d 0.0001 - 0.002 canopy interception coefficient Lex . -0.3 - -1.0 canopy light extinction coefficient Amax kg C/m2 leaf 0.01 - 0.03 maximum carbon assimilation rate; see eq. 5.12 and eq. 5.17 g1 . 0.1 - 1 stomatal control coefficient; related to the vpd dependence; see eq. 5.11 lwpmax m -80 - -200 maximum plant available soil water potential WH (0-1) 0.2/0.8 ratio of mesophyll to stomatal conductance; use 0.2 for C3 plants (eg. wheat, eucalypts, pines) and 0.8 for C4 plants (eg. sedges); see eq. 5.16 WN (0-1) 0-1 nutrient weighting parameter; a value of 1 means that nutrients are limiting, a value of 1 means that nutrient content limits growth as much as water content, a value of 0 means that nutrients do not limit growth; see eq. 5.16 Thalf oC 10-20 temperature half saturation rate; see eq. 5.16 Topt oC 20-30 optimal temperature for assimilation; see eq. 5.16 jdgerm day number 1 - 365 germination day number for annuals; use value of -1 if annuals not used ddh days oC 10000 - 20000 degree day hours to senescence value; use value of -1 if annuals not used Qpast mmoles/m2 leaf /s1 1200 - 1800 light saturation intensity; see eq. 5.16 rmax m 0.2 - 40.0 maximum plant rooting depth sla m2 leaf /kg leaf C 10-60 leaf area per unit mass of leaf carbon xleafres kg/kg/d 0.001 - 0.004 leaf maintenance respiration coefficient xstemres kg/kg/d 0.0001 - 0.0004 stem maintenance respiration coefficient; set to -1 for non-woody plants xrootres kg/kg/d 0.001 - 0.004 root maintenance respiration coefficient xlmort kg/kg/d 0.01 - 0.03 daily leaf mortality rate xsmort kg/kg/d 0.01 - 0.03 daily stem mortality rate; set to -1 for non-woody plants xrmort kg/kg/d 0.01 - 0.03 daily root mortality rate abpart (0-1) 0.2 - 0.6 proportion of total fixed carbon allocated to stem and leaf saltf . 0 - 4 salt sensitivity parameter; a value of 1 means that salt content limits growth as much as water content, a value of 0 means that salt does not limit growth; this is usually set to 1 ra s/m 15 - 60 aerodynamic resistance for the plant canopy rs s/m 50-110 aerodynamic resistance for the soil surface xrootwt (0-1) 0-1 ignore this item; set to 1 for now type text . vegetation type; enter any text string as a descriptor, starting with '#'
5.8.4 Additional vegetation inputs when the plant growth option is invoked
For each vegetation type represented in the catchment, the following information must be provided:
- initial root carbon values for each node in each soil profile (listed in a .rootc >file)
- initial leaf carbon values for each vegetation type (listed in the .par > file, built using Topog_simgen >; see section 5.13)
- initial leaf carbon to stem carbon ratios for each vegetation type (listed in the .par > file, built using Topog_simgen >; see section 5.13)
The .rootc > file contains a single column of values (in units of kg/m2) and must have the same number of lines as the .nodes > file it is linked to (see section 5.7.1). Unlike soil water solute concentration, the root carbon value is a total mass for the block of soil centred on each node. For this reason, zero values are ascribed to the top and bottom nodes.
.nodes> file .rootc> file
0.0 1 0.005 0.001 1 0.004 0.05 1 0.003 0.1 1 0.003 0.3 1 0.003 0.5 2 0.002 0.7 2 0.002 1.0 2 0.002
0.0 0.01 0.02 0.02 0.03 0.02 0.02 0.0The .rootc >file is ignored if a simulation is started with a .fin >file.
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